NADPH topology

From: flavio seixas (oivalf_nix_at_yahoo.com)
Date: Fri May 27 2011 - 08:58:17 CDT

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Hi all,

I am trying to simulate a protein bound to NAD+

However, the topology of the pdb files that I found seems to be different from that found in the namd (charmm) topology files.

I am asking to someone that have already worked with nad+ if can send me the atom names usage of NAD+ that must be placed in the pdb files.

I am a beginner in MD simulations. I am woried to change pdb file by myself.

Thanks for any help.

Flavio

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