From: Eli Fine (elifine_at_gatech.edu)
Date: Tue Apr 26 2011 - 14:22:11 CDT
Hello,
I'm trying to add a single extra bond to my NAMD simulation.
I can run the NAMD file fine if I comment out the two extra bond lines
#extraBonds yes
#extraBondsFile azoTrans.txt
but when I run it with those enabled, then it gives me this error
FATAL ERROR: ABNORMAL EOF FOUND - buffer=*bond 8509 8644 50. 17.*
my extrabonds file consists of just these two lines:
#atom IDs are 0-indexed
bond 8509 8644 50. 17.
I have tried running it without the decimal points in the extra bond file
and with 0s after the decimal points, but nothing seems to work.
As far as I can tell I am following the instructions posted online, but
there are no example files and no one else seems to be running in to this
problem, so I'm confused.
Thanks,
Eli
This archive was generated by hypermail 2.1.6 : Mon Dec 31 2012 - 23:20:11 CST