From: Buddhadev Maiti (chebm_at_langate.gsu.edu)
Date: Fri Apr 08 2011 - 10:45:19 CDT
Dear NAMD Users,
I am working on membrane simulation. I did long NPT run to compress the box and no undesirable gaps present between the periodic images of box. After that I switch to NVT ConstantArea production run. I am getting immediately gaps between the periodic images. And also the gap is in between protein and lipids. If I go for more production run, the gaps are growing more and I am getting unphysical results. Could you please reply me any suggestions, it will be great help for me.
Have a nice day,
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