From: snoze pa (snoze.pa_at_gmail.com)
Date: Mon Feb 14 2011 - 15:01:31 CST
Flavio,
My protein is a hetro tetramer (two unit of each molecule in the complex
e,g. ABAB). So I need help to start the simulation. Shall I use whole
tetramer or only one unit from each molecule(total two unit e.g AB or BA) as
an input molecule.
Thanks
S
On Mon, Feb 14, 2011 at 2:13 PM, flavio seixas <oivalf_nix_at_yahoo.com> wrote:
> I am not sure if I understand what you are trying to do...
> Try to explain a little more.
>
> Flavio
>
>
> --- On *Sun, 2/13/11, snoze pa <snoze.pa_at_gmail.com>* wrote:
>
>
> From: snoze pa <snoze.pa_at_gmail.com>
> Subject: namd-l: Tetramer protein complex
> To: namd-l_at_ks.uiuc.edu
> Date: Sunday, February 13, 2011, 6:54 AM
>
>
> Dear NAMD users,
>
> I am planning to start a MD simulation of a protein for which the tetramer
> structure is known with other protein(two subunit of each protein in
> tetramer). So To start MD simulation, Shall I use the whole tetramer or
> select one monomer from the tetramer as dimer.
>
> Thank you.
>
> S
>
>
>
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