Using VMD paratool

From: 李佳键 (dllizhongwei_at_gmail.com)
Date: Mon Jul 11 2011 - 16:24:12 CDT

Dear All:

     Does anyone knows how to generate topology and parameter file through
paratool (VMD plug-in) for iron complex nested in parent molecular? (Not for
the whole protein.)

     I referred to VMD users guide:
http://www.ks.uiuc.edu/Research/vmd/plugins/paratool/usersguide.html,
however didn't get the clue dealing with parametrized part from a pdb file.

Yours
Li

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