(no subject)

From: ipsita basu (ibasu788_at_gmail.com)
Date: Fri Oct 08 2010 - 06:00:41 CDT

Hi all,
         I am trying to minimize a lipid-bilyer system using namd, but
during minimization the waters from one leaflet appears to be on the
other side and then the job was terminated giving error like
Bad global exclusion count, possible error!
Increasing cutoff during minimization may avoid this.
 But I increase the cutoff and reduce the cell size but it doesnot
change. I attach my input here.
Is there anyone to help me? Please help me.

Ipsita Basu
Research Fellow
c/o : Dr. Chaitali Mukhopadhyay
Rajabazar Science College
92 APC Road
Kolkata - 700009

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