launch NAMD from tcl script

From: Floris Buelens (
Date: Wed Jun 24 2009 - 06:55:06 CDT


I'm trying to script some 'live' analysis in TCL - what I want to do is save coordinates with 'output', then start another instance of NAMD to do a single-frame calculation with different parameters. I thought I could do this along the lines of "exec ~/namd2 alt.conf" but I get "error reading output from command: interrupted system call"... what am I doing wrong?
thanks a lot!



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