Re: TMD for moving ion across membrane

From: yun luo (
Date: Tue May 26 2009 - 13:50:55 CDT

> I want to use TMD. In the UG, it says "RMS*(t) evolves linearly from the
> initial RMSD at the first TMD step to the final RMSD at the last TMD step".
> Could anyone explain me what it means if I want to move one ion across a
> membrane? I know RMS(t) depends on the instaneous position of ion from the
> target position. But how does RMS*(t) evolve?
> Thanks a lot!
> Ly

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