TMD for moving ion across membrane

From: yun luo (
Date: Mon May 25 2009 - 12:10:59 CDT


I want to use TMD. In the UG, it says "[image: $ RMS^*(t)$] evolves
linearly from the initial RMSD at the first TMD step to the final RMSD at
the last TMD step". Could anyone explain me what it means if I want to move
one ion across a membrane? I know RMS(t) depends on the instaneous position
of ion from the target position. But how does RMS*(t) evolve?

Thanks a lot!


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