geomtery optimization with namd

From: Roman Petrenko (
Date: Mon May 04 2009 - 16:18:03 CDT

Dear all,
we have some experimental constraints for certain pairs of residues
for existing PDB structure. What is the standard procedure to perform
geometry optimization with new constraints using NAMD?
Is there a classical paper?

Roman Petrenko
Physics Department
University of Cincinnati

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