FATAL ERROR: Bad global exclusion count

From: Idit Buch (iditbuch_at_gmail.com)
Date: Tue Jun 12 2007 - 09:04:17 CDT

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Hello all,

While running equilibration on a protein, using periodic boundary
conditions, I received
the following crash:

FATAL ERROR: Bad global exclusion count!

FATAL ERROR: See http://www.ks.uiuc.edu/Research/namd/bugreport.html
------------- Processor 0 Exiting: Called CmiAbort ------------
Reason: FATAL ERROR: Bad global exclusion count!
FATAL ERROR: See http://www.ks.uiuc.edu/Research/namd/bugreport.html

Stack Traceback:
  [0] _ZN10Controller9algorithmEv+0x4e8 [0x81f46a8]
  [1] _ZN10Controller9threadRunEPS_+0xc [0x8200a06]
  [2] /usr/local/namd/namd2.i686 [0x82eddb5]
  [3] Charm++ Runtime: Converse thread (qt_args+0x72 [0x83722ee])
Fatal error on PE 0> FATAL ERROR: Bad global exclusion count!

FATAL ERROR: See http://www.ks.uiuc.edu/Research/namd/bugreport.html

The input pdb file looks OK, i.e., the protein is well inside the box of
water.

Does anyone have a clue?

Thanks

Idit Buch

Ph.D. student of Bio-nanotechnology

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