From: Viswanadham Sridhara (muta.mestri_at_gmail.com)
Date: Wed May 16 2007 - 12:30:38 CDT
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On 5/16/07, lnubiofox <lnubiofox_at_163.com> wrote:
>
> Dear Dong Luo,
>
> Thank you very much for your script which help me a lot.It seems that
> you have solve the problem which puzzled me for a long time. I would like to
> express my thank to you and cite the script named hbond_occupancy in
> Acknowledgement of our paper which will be published soon.By the way,I
> suggest you submit your script to the vmd script library so that more users
> will benefit.
>
> However,there is still a question: I run the script and got a file in
> the appendix,but the result confuses me.For example ,there are many
> ARG35-ASP77s,what's the meaming of it? Is this a bug of the script or it
> means there are many H-bonds between ARG35-ASP77? If the latter,then how
> about divide them into main chain-main chain interaction, side chain-side
> chain interaction and main chain-side chain interaction?In other words,how
> to calculate main chain-main chain Hbonds,etc.? Use the atomselect command
> of vmd ?
>
> I highly appreciate your efforts on my question.Thank you again for
> your kind assistance and looking forward to your reply.
>
> With best regards,
>
>
>
> Yuan Liu
>
> Liaoning university
>
> ShenYang,P.R.China
>
>
>
>
>
>
> ________________________________
> 新萨拉·毕加索上市，全新价格12.58万元
>
> ________________________________
> 新萨拉·毕加索上市，全新价格12.58万元
>
-- Viswanadham Sridhara, Research Assistant, Old Dominion University, Norfolk, Va-23529.
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