Re: constant velocity SMD

From: Narender Singh Maan (
Date: Fri Jan 26 2007 - 12:49:07 CST

Sorry if i have missed, but are there more than one SMD tutorial? i used the
one about stretching ubiquitin.
thank you

On 1/26/07, Cesar Luis Avila <> wrote:
> Which SMD tutorial are you following? The one used to stretch a protein?
> The idea in that tutorial is to keep one end fixed while pulling from
> the other.
> I think that for using 2 fs step you should use some rigid bonds
> algorithm for hydrogens.
> Regards

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