Re: how add bond in psf file?

From: Jim Phillips (jim_at_ks.uiuc.edu)
Date: Thu Oct 05 2006 - 15:18:57 CDT

TclForces just adds forces, it doesn't modify vdW or other interactions.

It's documented in the User's Guide.

I don't understand your question about semirigid conformation states.

-Jim

On Tue, 26 Sep 2006, luca wrote:

> Thank You, Jim
> I have some question:
> When I apply "tclforce" in atoms that not are bonded, how is vdw interaction
> deal?
> Can I model a semirigid conformation state, like transition state or metal
> complex with TclForce method?
> Are there documetion for it
>
> Thanks in advance
> Luca
>
>> NAMD takes bonds seriously, since they are used to derive exclusions.
>> Your best option is to implement that H-O restraint in TclForces.
>> -Jim
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