(No subject)

From: a-yermakova_at_northwestern.edu
Date: Mon Jul 10 2006 - 12:50:19 CDT

('binary' encoding is not supported, stored as-is) After the minimization, the protein (in a water box) looks terrible in VMD! And in the log file it
keeps saying "Warning: Bad global exclusion count, possible error!
Warning: Increasing cutoff during minimization may avoid this.".
Is the small cutoff value responsible for such a poor representation or can I do something else to
change it?

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