caps

From: AYTUG TUNCEL (ATUNCEL_at_KU.EDU.TR)
Date: Mon Jul 10 2006 - 12:53:23 CDT

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hi all,

I m runing a simulation(minimization) with caps(Ac and amide) on both ends of the protein. When I load the .psf and .coor files into vmd(after minimization) and save the file in .pdb format I lost the caps. is it always the case or does that mean the namd did not concider the caps during the simulation? thanks for the help

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