RE: more Heme troubles

From: Ralph Jimenez (rjimenez_at_jila.colorado.edu)
Date: Thu Nov 03 2005 - 13:19:54 CST

It turns out the problem generating the heme PSF (Oct 6 2005) from my
last post is due to a defective topology file.
  I used the topology file included in the VMD distribution plugins
  ...\noarch\tcl\membrane 1.0\top_all27_prot_lipid.inp
  This file has incorrect atom types listed for some of the sidechains
on the heme cofactor. The heme should not have any atoms of type C.

-- 
Ralph Jimenez, Ph.D.
JILA and Department of Chemistry
440 UCB
University of Colorado, Boulder
Boulder, CO 80309-0440
Tel: (303) 492-8439
FAX: (303) 492-5235

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