rigid bonds for other atoms

From: Kyle Gustafson (kgustaf_at_umd.edu)
Date: Thu Oct 06 2005 - 13:40:23 CDT

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Hi list,

For our simulation, we need to make other types of bonds,
besides hydrogen bonds, rigid so that our model molecules
will keep their shapes (a simple rectangle) during the NAMD
run.

I know rigidbonds will do this for hydrogens, but is there
any easy way to generalize this feature to other types of
atoms, or is will this be a source edit? Ideally, we would
like to keep bond lengths and angles constant during the
simulation.

Thanks for your thoughts,

--Kyle

Kyle B. Gustafson
Department of Physics
University of Maryland
College Park, MD USA
Office: 301-405-4923

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