From: Luis Rosales (ludwig_at_correo.biomedicas.unam.mx)
Date: Fri Jun 24 2005 - 03:25:46 CDT
Hi Vincent,
See the Userguide... :P
just kidding!
Well, to do that and assuming that you have your psf and pdb files for each
molecule, you just run an script like this on vmd:
-------------------------------------------------
package require psfegen
readpsf file1.psf
readpsf file2.psf
coordpdb file1.pdb
coordpdb file2.pdb
writepsf all.psf
writepdb all.pdb
------------------------------------------------
And Voilá!!! You are done...
Hope this helps, and sorry for the silly joke... :)
Ludwig
>
> Can anybody help:
>
> I have two different pdb files and I can generate the separate psf
> files for namd run. Now, a very basic question: how can I combine both
> molecules for a single namd simulation? Sorry if this sounds silly... but
I'm new on this.
>
> Vincent
>
>
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