From: Jerry Ebalunode (jebalunode_at_UH.EDU)
Date: Mon Jun 13 2005 - 18:22:51 CDT

Assuming you used a CHARMM based forcefield and have access to charmm, you
could follow the example in using charmm to MM-PBSA in the following page at
charmm forums

On Monday 13 June 2005 03:41 pm, Wei Chen wrote:
> Hi, all,
> Have anybody ever used MM/PBSA method to calculate the absolute binding
> energy with NAMD trajectory? Could you tell me any reference paper
> and protocol?
> Thanks!
> Wei Chen
> --

Jerry Ebalunode
Ph.D. Candidate
RM 402F Houston Science Center
Phone: 713-743-8367
Dept. of Biology and Biochemistry
University of Houston
4800 Calhoun Road
Houston, TX 77204
"No trees were killed in the posting of this message. However a large number 
of electrons were terribly inconvenienced..." 
Marcos Topete

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