Re: Trajectory file.

From: s.bora erdemli (
Date: Fri May 13 2005 - 17:30:58 CDT

      Hi All

      there is also a matlab sript which you can read and write a dcd file with. here is the link which you can download and use:

best regards

Sabri Bora Erdemli
Research and Teaching Asistant
Computational Sciences and Engineering

  ----- Original Message -----
  From: Boyang Wang
  Sent: Saturday, May 14, 2005 12:20 AM
  Subject: namd-l: Trajectory file.

  Hi all. I have saved about 80 restart files in a queue. I also have the relative DCD files.
        But I don't know how to read all the coordinates in the DCD files. I just want to know the movement of some special part of the atoms in the simulation.
       Does anyone know how to open DCD file? I opened them before but it didn't show arabic numbers but showed some weird code that was not readable.
  Univ, Illinois, Chicago.

  Do You Yahoo!?

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