visualizing dynamics output

From: Samuel Flores (
Date: Tue Mar 22 2005 - 11:31:31 CST

Howdy all,

Many thanks for past help getting set up on NAMD! I have successfully
completed a few test runs. On a certain protein I try to run, I get very
high energies (sometimes maxing out at 99999999) but no warnings or errors.
In order to diagnose what's going wrong, I think I need to visualize the
motion of the protein in its water sphere. Is there some way to do this?


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