From: Gengbin Zheng (gzheng_at_ks.uiuc.edu)
Date: Tue Mar 08 2005 - 17:21:13 CST
ok, do a
ls ~/namd/charm-mpi-linux-ia64-ifort-mpt-icc/mpi-linux-ia64-ifort-mpt-icc/include
see if the directory is there.
If this is not the problem, change your CHARMBASE in Make.charm to:
$(HOME/namd/charm-mpi-linux-ia64-ifort-mpt-icc
avoid '~' in Makefile.
Gengbin
Michel Espinoza-Fonseca wrote:
>This is the error line I got:
>
>mkdir inc
>mkdir obj
>ecpc -D_IA64 -I/usr/local/gnu/include -DSOCKLEN_T=socklen_t
>-I~/namd/charm-mpi-linux-ia64-ifort-mpt-icc/mpi-linux-ia64-ifort-mpt-icc
>/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -I~/namd/LINUXIA64/LINUXIA64
>-I~/namd/LINUXIA64/LINUXIA64/molfile -I~/namd/LINUXIA64/include
>-I/home/bscl2/espinoza/plugins/LINUXIA64
>-I/home/bscl2/espinoza/plugins/LINUXIA64/molfile
>-I/home/bscl2/espinoza/plugins/include -DNAMD_PLUGINS
>-I~/namd/linuxia64/include -I/home/bscl2/espinoza/tcl/include -DNAMD_TCL
>-DUSE_NON_CONST -I~/namd/linuxia64/include
>-I/home/bscl2/espinoza/fftw-linux/include -DNAMD_FFTW
>-DNAMD_VERSION=\"2.5\" -DNAMD_PLATFORM=\"Linux-ia64\" -O2 -ftz -IPF_fma
>-IPF_fltacc -IPF_flt_eval_method0 -IPF_fp_speculationfast -o
>obj/common.o -c src/common.C
>ecpc: warning: The Intel C/C++ driver is now named icpc. You can
>suppress this message with '-quiet'
>src/common.C(11): catastrophic error: could not open source file
>"charm++.h"
> #include "charm++.h"
> ^
>
>compilation aborted for src/common.C (code 4)
>make: *** [obj/common.o] Error 4
>
>Michel
>
>-----Original Message-----
>From: Gengbin Zheng [mailto:gzheng_at_ks.uiuc.edu]
>Sent: Tuesday, March 08, 2005 5:10 PM
>To: Michel Espinoza-Fonseca
>Cc: namd-l_at_ks.uiuc.edu
>Subject: Re: namd-l: namd on Altix
>
>
>I meant the actually ecpc command line that give you the error
>"charm++.h not found"
>
>Gengbn
>
>Michel Espinoza-Fonseca wrote:
>
>
>
>>Both CHARMBASE and CHARMARCH are correct. Here is the arch file
>>
>>
>>
>>
>>
>>>>>>>include .rootdir/arch/Linux-ia64-ecc.arch
>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>>
>> CHARMARCH=mpi-linux-ia64-ifort-mpt-icc <<<<<<
>>
>>And then in Linux-ia64-ecc.arch I have:
>>
>>
>>
>>
>>
>>>>>>NAMD_ARCH = Linux-ia64
>>>>>>
>>>>>>
>>>>>>
>>>>>>
>>CHARMARCH = mpi-linux-ia64-ifort-mpt-icc
>>
>>FLOATOPTS = -ftz -IPF_fma -IPF_fltacc -IPF_flt_eval_method0
>>-IPF_fp_speculationfast
>>
>>CXX = ecpc -D_IA64 -I/usr/local/gnu/include -DSOCKLEN_T=socklen_t
>>CXXOPTS = -O2 $(FLOATOPTS)
>>CXXNOALIASOPTS = -O2 -fno-alias $(FLOATOPTS) -opt_report \
>> -opt_report_levelmin -opt_report_routinecalc_
>>
>>CC = icc
>>COPTS = -O2 $(FLOATOPTS) <<<<
>>
>>About this command invoking ecpc, it is found in this second file
>>Linux-ia64-ecc.arch.
>>
>>For that reason I don't know what's going on here.
>>Thanks,
>>Michel
>>
>>-----Original Message-----
>>From: Gengbin Zheng [mailto:gzheng_at_ks.uiuc.edu]
>>Sent: Tuesday, March 08, 2005 5:00 PM
>>To: Michel Espinoza-Fonseca
>>Cc: namd-l_at_ks.uiuc.edu
>>Subject: Re: namd-l: namd on Altix
>>
>>
>>You need both CHARMBASE and CHARMARCH correct.
>>
>>What is the command that invokes ecpc?
>>
>>Gengbin
>>
>>Michel Espinoza-Fonseca wrote:
>>
>>
>>
>>
>>
>>>Sorry, but it is exactly what I did. I changed the CHARMBASE to
>>>~/namd/charm-mpi-linux-ia64-ifort-mpt-icc (this is the actual root dir
>>>for charm), but still it didn't work. I was trying several times
>>>
>>>
>before
>
>
>>>writing again, but I don't know...
>>>
>>>Michel
>>>
>>>-----Original Message-----
>>>From: Gengbin Zheng [mailto:gzheng_at_ks.uiuc.edu]
>>>Sent: Tuesday, March 08, 2005 4:54 PM
>>>To: Michel Espinoza-Fonseca
>>>Cc: namd-l_at_ks.uiuc.edu
>>>Subject: Re: namd-l: namd on Altix
>>>
>>>
>>>I think I have explained how it works:
>>>
>>>In Make.charm, you give CHARMBASE
>>>In the config_version.arch (where config_version is the version you
>>>config NAMD in the ./config command line), you defines CHARMARCH
>>>
>>>And the include search path is now: $(CHARMBASE)/$(CHARMARCH)/include
>>>And you need to make it right to your charm installation path.
>>>
>>>Just looks for the actual command below in -I flag to see if you have
>>>made that right.
>>>
>>>ecpc -D_IA64 -I/usr/local/gnu/include -DSOCKLEN_T=socklen_t
>>>-I~/namd/NAMD_2.5_Source/charm-mpi-linux-ia64-ifort-mpt-icc/mpi-linux-
>>>
>>>
>i
>
>
>>>
>>>
>>>
>>>
>>a
>>
>>
>>
>>
>>>64-ifort-mpt-icc/include/mpi-linux-ia64-gm/include
>>>
>>>
>>>Gengbin
>>>
>>>Michel Espinoza-Fonseca wrote:
>>>
>>>
>>>
>>>
>>>
>>>
>>>
>>>>Hi again,
>>>>I did exactly what you told me, but I still get the same error
>>>>(charm++.h can't be read). I really don't know what's happening.
>>>>I hope you can help me.
>>>>Thank you,
>>>>Michel
>>>>
>>>>-----Original Message-----
>>>>From: Gengbin Zheng [mailto:gzheng_at_ks.uiuc.edu]
>>>>Sent: Monday, March 07, 2005 6:59 PM
>>>>To: Michel Espinoza-Fonseca
>>>>Cc: namd-l_at_ks.uiuc.edu
>>>>Subject: Re: namd-l: namd on Altix
>>>>
>>>>
>>>>see what is in your command line about the -I option:
>>>>
>>>>ecpc -D_IA64 -I/usr/local/gnu/include -DSOCKLEN_T=socklen_t
>>>>-I~/namd/NAMD_2.5_Source/charm-mpi-linux-ia64-ifort-mpt-icc/mpi-linux
>>>>
>>>>
>-
>
>
>>>>
>>>>
>>>>
>>>>
>>i
>>
>>
>>
>>
>>>>
>>>>
>>>>
>>>>
>>>>
>>>>
>>>a
>>>
>>>
>>>
>>>
>>>
>>>
>>>>64-ifort-mpt-icc/include/mpi-linux-ia64-gm/include
>>>>
>>>>Of course I don't think you have that include directory.
>>>>
>>>>first, you must have put
>>>>
>>>>mpi-linux-ia64-ifort-mpt-icc/include in Make.charm, which like I
>>>>
>>>>
>said,
>
>
>>>>you can't do that since the config arch file will append
>>>>$(CHARMARCH)/include automatically.
>>>>Your Make.charm should have just the charm base
>>>>~/namd/NAMD_2.5_Source/charm-mpi-linux-ia64-ifort-mpt-icc
>>>>
>>>>and second, if you choose to config namd like:
>>>>config namd2/arch/Linux-ia64-MPI-GM-ecc
>>>>
>>>>then you are saying you have myrinet on Altix??
>>>>
>>>>If that's the case (I doubt), it then looks for
>>>>arch/Linux-ia64-MPI-GM-ecc.arch file, and CHARMARCH=mpi-linux-ia64-gm
>>>>
>>>>
>>>>
>>>>
>>>>
>>>>
>>>in
>>>
>>>
>>>
>>>
>>>
>>>
>>>>it.
>>>>That is namd assumes you have compiled "mpi-linux-ia64-gm" version of
>>>>
>>>>
>
>
>
>>>>Charm, and it appends mpi-linux-ia64-gm/include in -I option above.
>>>>However, you certainly don't have "mpi-linux-ia64-gm".
>>>>
>>>>Like I said, we config NAMD on altix like:
>>>>
>>>>./config fftw ... Linux-ia64-MPT-icc
>>>>
>>>>And modify Linux-ia64-MPT-icc.arch to have
>>>>CHARMARCH=mpi-linux-ia64-ifort-mpt-icc like I mentioned before.
>>>>
>>>>Gengbin
>>>>
>>>>
>>>>Michel Espinoza-Fonseca wrote:
>>>>
>>>>
>>>>
>>>>
>>>>
>>>>
>>>>
>>>>
>>>>
>>>>>This is what I have in the file /../arch/Linux-ia64-MPT-icc.arch
>>>>>
>>>>>include .rootdir/arch/Linux-ia64-ecc.arch
>>>>>CHARMARCH = mpi-linux-ia64-gm
>>>>>
>>>>>Then going the file Linux-ia64-ecc.arch, I have this:
>>>>>
>>>>>NAMD_ARCH = Linux-ia64
>>>>>CHARMARCH = net-linux-ia64-ecc
>>>>>
>>>>>FLOATOPTS = -ftz -IPF_fma -IPF_fltacc -IPF_flt_eval_method0
>>>>>-IPF_fp_speculationfast
>>>>>
>>>>>CXX = ecpc -D_IA64 -I/usr/local/gnu/include -DSOCKLEN_T=socklen_t
>>>>>CXXOPTS = -O2 $(FLOATOPTS)
>>>>>CXXNOALIASOPTS = -O2 -fno-alias $(FLOATOPTS) -opt_report \
>>>>> -opt_report_levelmin -opt_report_routinecalc_
>>>>>
>>>>>CC = ecc
>>>>>COPTS = -O2 $(FLOATOPTS)
>>>>>
>>>>>At the end I downloaded the compiled version of charm++
>>>>>(/mpi-linux-ia64-ifort-mpt-icc) and I stored all files in a dir.
>>>>>
>>>>>
>>>>>
>>>>>
>>Thus,
>>
>>
>>
>>
>>>>>when I did:
>>>>>
>>>>>$config tcl fftw plugins Linux-ia64-MPI-GM-ecc
>>>>>
>>>>>And then 'make' on the dir 'Linux-ia64-MPI-GM-ecc', I got this:
>>>>>
>>>>>mkdir inc
>>>>>mkdir obj
>>>>>ecpc -D_IA64 -I/usr/local/gnu/include -DSOCKLEN_T=socklen_t
>>>>>-I~/namd/NAMD_2.5_So
>>>>>urce/charm-mpi-linux-ia64-ifort-mpt-icc/mpi-linux-ia64-ifort-mpt-icc
>>>>>
>>>>>
>/
>
>
>>>>>
>>>>>
>>>>>
>>>>>
>>i
>>
>>
>>
>>
>>>>>
>>>>>
>>>>>
>>>>>
>>>>>
>>>>>
>>>n
>>>
>>>
>>>
>>>
>>>
>>>
>>>>>
>>>>>
>>>>>
>>>>>
>>>>>
>>>>>
>>>>>
>>>>>
>>>>c
>>>>
>>>>
>>>>
>>>>
>>>>
>>>>
>>>>
>>>>
>>>>>lude/mpi
>>>>>-linux-ia64-gm/include -DCMK_OPTIMIZE=1 -Isrc -Iinc
>>>>>-I~/namd/LINUXIA64/LINUXIA
>>>>>64 -I~/namd/LINUXIA64/LINUXIA64/molfile -I~/namd/LINUXIA64/include
>>>>>-I/home/bscl2
>>>>>/espinoza/plugins/LINUXIA64
>>>>>-I/home/bscl2/espinoza/plugins/LINUXIA64/molfile -I/
>>>>>home/bscl2/espinoza/plugins/include -DNAMD_PLUGINS
>>>>>-I~/namd/linuxia64/include -I
>>>>>/home/bscl2/espinoza/tcl/include -DNAMD_TCL -DUSE_NON_CONST
>>>>>-I~/namd/linuxia64/i
>>>>>nclude -I/home/bscl2/espinoza/fftw-linux/include -DNAMD_FFTW
>>>>>-DNAMD_VERSION=\"2
>>>>>.5\" -DNAMD_PLATFORM=\"Linux-ia64-MPI-GM\" -O2 -ftz -IPF_fma
>>>>>-IPF_fltacc -IPF_f
>>>>>lt_eval_method0 -IPF_fp_speculationfast -o obj/common.o -c
>>>>>
>>>>>
>>>>>
>>>>>
>>>>>
>>>>>
>>>src/common.C
>>>
>>>
>>>
>>>
>>>
>>>
>>>>>ecpc: warning: The Intel C/C++ driver is now named icpc. You can
>>>>>suppress this
>>>>>message with '-quiet'
>>>>>src/common.C(11): catastrophic error: could not open source file
>>>>>"charm++.h"
>>>>>#include "charm++.h"
>>>>> ^
>>>>>compilation aborted for src/common.C (code 4)
>>>>>make: *** [obj/common.o] Error 4
>>>>>
>>>>>I got this error even though I changed many times the location of
>>>>>
>>>>>
>the
>
>
>>>>>charm parent dir. What I originally had in the file Make.charm was:
>>>>>
>>>>># Set CHARMBASE to the top level charm directory.
>>>>>
>>>>>CHARMBASE =
>>>>>/home/bscl2/espinoza/namd/NAMD_2.5_Source/charm-mpi-linux-ia64-ifort
>>>>>
>>>>>
>-
>
>
>>>>>
>>>>>
>>>>>
>>>>>
>>m
>>
>>
>>
>>
>>>>>
>>>>>
>>>>>
>>>>>
>>>>>
>>>>>
>>>p
>>>
>>>
>>>
>>>
>>>
>>>
>>>>>
>>>>>
>>>>>
>>>>>
>>>>>
>>>>>
>>>>>
>>>>>
>>>>t
>>>>
>>>>
>>>>
>>>>
>>>>
>>>>
>>>>
>>>>
>>>>>-icc/mpi-linux-ia64-ifort-mpt-icc
>>>>>#CHARMBASE = C:/cygwin$(HOME)/charm
>>>>>
>>>>>So I hope this information will be useful for getting helped.
>>>>>Thank you.
>>>>>
>>>>>Cheers,
>>>>>Michel
>>>>>
>>>>>-----Original Message-----
>>>>>From: Gengbin Zheng [mailto:gzheng_at_ks.uiuc.edu]
>>>>>Sent: Monday, March 07, 2005 6:28 PM
>>>>>To: Gengbin Zheng
>>>>>Cc: Michel Espinoza-Fonseca; namd-l_at_ks.uiuc.edu
>>>>>Subject: Re: namd-l: namd on Altix
>>>>>
>>>>>
>>>>>
>>>>>Show us the what's in file namd2/arch/Linux-ia64-MPT-icc.arch
>>>>>And your build command to compile charm and namd.
>>>>>
>>>>>Gengbin Zheng wrote:
>>>>>
>>>>>
>>>>>
>>>>>
>>>>>
>>>>>
>>>>>
>>>>>
>>>>>
>>>>>
>>>>>
>>>>>>Like I said, you need to modify CHARMARCH in
>>>>>>namd2/arch/Linux-ia64-MPT-icc.arch
>>>>>>assuming you configured namd using:
>>>>>>
>>>>>>./config .... Linux-ia64-MPT-icc
>>>>>>
>>>>>>watch the actual compile command line to see if your change went
>>>>>>
>>>>>>
>>>>>>
>>>>>>
>>>>>>
>>>>>>
>>>>>>
>>>>>>
>>>>>>
>>>>>>
>>>>>through.
>>>>>
>>>>>
>>>>>
>>>>>
>>>>>
>>>>>
>>>>>
>>>>>
>>>>>
>>>>>
>>>>>>Gengbin
>>>>>>
>>>>>>Michel Espinoza-Fonseca wrote:
>>>>>>
>>>>>>
>>>>>>
>>>>>>
>>>>>>
>>>>>>
>>>>>>
>>>>>>
>>>>>>
>>>>>>
>>>>>>
>>>>>>>It's me again. I modify the Make.charm file, and I still got an
>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>>
>>>error
>>>
>>>
>>>
>>>
>>>
>>>
>>>>>>>referring to charm++.h. It's so annoying, because I feel I'm doing
>>>>>>>something wrong. Do you have another suggestion?
>>>>>>>Michel
>>>>>>>
>>>>>>>-----Original Message-----
>>>>>>>From: Gengbin Zheng [mailto:gzheng_at_ks.uiuc.edu] Sent: Monday,
>>>>>>>
>>>>>>>
>March
>
>
>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>>
>>
>>
>>
>>
>>>>>>>07, 2005 2:23 PM
>>>>>>>To: Michel Espinoza-Fonseca
>>>>>>>Cc: namd-l_at_ks.uiuc.edu
>>>>>>>Subject: Re: namd-l: namd on Altix
>>>>>>>
>>>>>>>
>>>>>>>normally you just need root directory.
>>>>>>>you don't need to sepcify the version directory, however, if there
>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>>
>>>is
>>>
>>>
>>>
>>>
>>>
>>>
>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>>
>>>>>
>>>>>
>>>>>
>>>>>
>>>>>
>>>>>
>>>>>
>>>>>
>>>>>>>minor different,
>>>>>>>modify the CHARMARCH in Linux-ia64-MPT-icc.arch for example.
>>>>>>>
>>>>>>>Gengbin
>>>>>>>
>>>>>>>Michel Espinoza-Fonseca wrote:
>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>>>Hi again. I have another question. Do I have to set the root
>>>>>>>>
>>>>>>>>
>>>>>>>>
>>>>>>>>
>>>>>>>>
>>>>>>>>
>>>>>>>>
>>>>>>>>
>>>>>>>>
>>>>>>>>
>>>>>directory
>>>>>
>>>>>
>>>>>
>>>>>
>>>>>
>>>>>
>>>>>
>>>>>
>>>>>
>>>>>
>>>>>>>>
>>>>>>>>
>>>>>>>>
>>>>>>>>
>>>>>>>>
>>>>>>>>
>>>>>>>>
>>>>>>>>
>>>>>>>>
>>>>>>>>
>>>>>>>where charm is installed (for example, the unzipped directory of
>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>>
>>the
>>
>>
>>
>>
>>>>>>>precompiled version)? I was trying to do this when compiling NAMD,
>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>>
>>>>>but
>>>>>
>>>>>
>>>>>
>>>>>
>>>>>
>>>>>
>>>>>
>>>>>
>>>>>
>>>>>
>>>>>>>it didn't work. Perhaps I'm doing something wrong.
>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>>>Sorry for the inconveniences.
>>>>>>>>Cheers,
>>>>>>>>Michel
>>>>>>>>
>>>>>>>>
>>>>>>>>-----Original Message-----
>>>>>>>>From: Gengbin Zheng [mailto:gzheng_at_ks.uiuc.edu]
>>>>>>>>Sent: Mon 3/7/2005 1:39 PM
>>>>>>>>To: Michel Espinoza-Fonseca
>>>>>>>>Cc: namd-l_at_ks.uiuc.edu
>>>>>>>>Subject: Re: namd-l: namd on Altix
>>>>>>>>
>>>>>>>>
>>>>>>>>You can refer to the NAMD notes.txt on how to compile NAMD. For
>>>>>>>>
>>>>>>>>
>>>>>>>>
>>>>>>>>
>>>>>>>>
>>>>>>>>
>>>that
>>>
>>>
>>>
>>>
>>>
>>>
>>>>>>>>
>>>>>>>>
>>>>>>>>
>>>>>>>>
>>>>>>>>
>>>>>>>>
>>>>>>>>
>>>>>>>>
>>>>>>>>
>>>>>>>>
>>>>>
>>>>>
>>>>>
>>>>>
>>>>>
>>>>>
>>>>>
>>>>>
>>>>>>>>error, you need to config NAMD Make.charm to tell NAMD where
>>>>>>>>
>>>>>>>>
>Charm
>
>
>>>>>>>>
>>>>>>>>
>>>>>>>>
>>>>>>>>
>>
>>
>>
>>
>>>>>>>>is installed.
>>>>>>>>
>>>>>>>>Gengbin
>>>>>>>>
>>>>>>>>Michel Espinoza-Fonseca wrote:
>>>>>>>>
>>>>>>>>
>>>>>>>>
>>>>>>>>
>>>>>>>>
>>>>>>>>
>>>>>>>>
>>>>>>>>
>>>>>>>>
>>>>>>>>
>>>>>>>>
>>>>>>>>
>>>>>>>>
>>>>>>>>
>>>>>>>>
>>>>>>>>>Thank you for your reply. Actually I don't have any problem
>>>>>>>>>
>>>>>>>>>
>>>>>>>>>
>>>>>>>>>
>>>>>>>>>
>>>>>>>>>
>>>>>>>>>
>>>>>>>>>
>>>>>>>>>
>>>>>>>>>
>>>>>compiling
>>>>>
>>>>>
>>>>>
>>>>>
>>>>>
>>>>>
>>>>>
>>>>>
>>>>>
>>>>>
>>>>>>>>>charm, but when I try to build NAMD, simply it doesn't work. I
>>>>>>>>>
>>>>>>>>>
>>>>>>>>>
>>>>>>>>>
>>>>>>>>>
>>>>>>>>>
>>>>>>>>>
>>>>>>>>>
>>>>>>>>>
>>>>>>>>>
>>>>>>>>>
>>>>>>>remember
>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>>>>that appears something like "charm++.h not found". So I don't
>>>>>>>>>
>>>>>>>>>
>>>>>>>>>
>>>>>>>>>
>>>>>>>>>
>>>>>>>>>
>>>>>>>>>
>>>>>>>>>
>>>>>>>>>
>>>>>>>>>
>>>>>know...
>>>>>
>>>>>
>>>>>
>>>>>
>>>>>
>>>>>
>>>>>
>>>>>
>>>>>
>>>>>
>>>>>>>>>Michel
>>>>>>>>>
>>>>>>>>>-----Original Message-----
>>>>>>>>>From: Gengbin Zheng [mailto:gzheng_at_ks.uiuc.edu] Sent: Monday,
>>>>>>>>>
>>>>>>>>>
>>>>>>>>>
>>>>>>>>>
>>>>>>>>>
>>>>>>>>>
>>>March
>>>
>>>
>>>
>>>
>>>
>>>
>>>>>>>>>
>>>>>>>>>
>>>>>>>>>
>>>>>>>>>
>>>>>>>>>
>>>>>>>>>
>>>>>>>>>
>>>>>>>>>
>>>>>>>>>
>>>>>>>>>
>>>>>
>>>>>
>>>>>
>>>>>
>>>>>
>>>>>
>>>>>
>>>>>
>>>>>>>>>07, 2005 1:34 PM
>>>>>>>>>To: Michel Espinoza-Fonseca
>>>>>>>>>Cc: namd-l_at_ks.uiuc.edu
>>>>>>>>>Subject: Re: namd-l: namd on Altix
>>>>>>>>>
>>>>>>>>>Michel Espinoza-Fonseca wrote:
>>>>>>>>>
>>>>>>>>>
>>>>>>>>>
>>>>>>>>>
>>>>>>>>>
>>>>>>>>>
>>>>>>>>>
>>>>>>>>>
>>>>>>>>>
>>>>>>>>>
>>>>>>>>>
>>>>>>>>>
>>>>>>>>>
>>>>>>>>>
>>>>>>>>>
>>>>>>>>>
>>>>>>>>>>Hi all,
>>>>>>>>>>
>>>>>>>>>>Does anybody have compiled NAMD on Altix (i64 proc.). I was
>>>>>>>>>>
>>>>>>>>>>
>>>>>>>>>>
>>>>>>>>>>
>>>>>>>>>>
>>>>>>>>>>
>>>trying
>>>
>>>
>>>
>>>
>>>
>>>
>>>>>>>>>>
>>>>>>>>>>
>>>>>>>>>>
>>>>>>>>>>
>>>>>>>>>>
>>>>>>>>>>
>>>>>>>>>>
>>>>>>>>>>
>>>>>>>>>>
>>>>>>>>>>
>>>>>to
>>>>>
>>>>>
>>>>>
>>>>>
>>>>>
>>>>>
>>>>>
>>>>>
>>>>>
>>>>>
>>>>>>>>>>
>>>>>>>>>>
>>>>>>>>>>
>>>>>>>>>>
>>>>>>>>>>
>>>>>>>>>>
>>>>>>>>>>
>>>>>>>>>>
>>>>>>>>>>
>>>>>>>>>>
>>>>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>>>>>compile it, without success. It'll be very useful for me if
>>>>>>>>>>somebody can provide the namd exe for this system.
>>>>>>>>>>
>>>>>>>>>>Thank you very much!
>>>>>>>>>>
>>>>>>>>>>Cheers,
>>>>>>>>>>
>>>>>>>>>>Michel
>>>>>>>>>>
>>>>>>>>>>L. Michel Espinoza-Fonseca
>>>>>>>>>>
>>>>>>>>>>BSBI, UMN
>>>>>>>>>>
>>>>>>>>>>mef_at_ddt.biochem.umn.edu
>>>>>>>>>>
>>>>>>>>>>
>>>>>>>>>>
>>>>>>>>>>
>>>>>>>>>>
>>>>>>>>>>
>>>>>>>>>>
>>>>>>>>>>
>>>>>>>>>>
>>>>>>>>>>
>>>>>>>>>>
>>>>>>>>>>
>>>>>>>>>>
>>>>>>>>>>
>>>>>>>>>>
>>>>>>>>>You can download the latest charm at:
>>>>>>>>>http://charm.cs.uiuc.edu/autobuild/cur
>>>>>>>>>
>>>>>>>>>You can even try the pre-compiled version look for
>>>>>>>>>mpi-linux-ia64-ifort-mpt-icc
>>>>>>>>>
>>>>>>>>>
>>>>>>>>>
>>>>>>>>>
>>>>>>>>>
>>>>>>>>>
>>>>>>>>>
>>>>>>>>>
>>>>>>>>>
>>>>>>>>>
>>>>>>>>>
>>>>><http://charm.cs.uiuc.edu/autobuild/cur/mpi-linux-ia64-ifort-mpt-icc
>>>>>
>>>>>
>.
>
>
>>>>>
>>>>>
>>>>>
>>>>>
>>t
>>
>>
>>
>>
>>>>>
>>>>>
>>>>>
>>>>>
>>>>>
>>>>>
>>>>>
>>>>>
>>>>>>>>>
>>>>>>>>>
>>>>>>>>>
>>>>>>>>>
>>>>>>>>>
>>>>>>>>>
>>>>>>>>>
>>>>>>>>>
>>>>>>>>>
>>>>>>>>>
>>>>>>>xt
>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>>>>To compile charm, use:
>>>>>>>>>./build charm++ mpi-linux-ia64 mpt icc ifort
>>>>>>>>>
>>>>>>>>>Gengbin
>>>>>>>>>
>>>>>>>>>
>>>>>>>>>
>>>>>>>>>
>>>>>>>>>
>>>>>>>>>
>>>>>>>>>
>>>>>>>>>
>>>>>>>>>
>>>>>>>>>
>>>>>>>>>
>>>>>>>>>
>>>>>>>>>
>>>>>>>>>
>>>>>>>>>
>>>>>>>>>
>>>>>>>>>
>>>>>>>>>
>>>>>>>>
>>>>>>>>
>>>>>>>>
>>>>>>>>
>>>>>>>>
>>>>>>>>
>>>>>>>>
>>>>>>>>
>>>>>>>>
>>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>>
>>>>>
>>>>>
>>>>>
>>>>>
>>>>>
>>>>>
>>>>>
>>>>>
>>>>
>>>>
>>>>
>>>>
>>>>
>>>>
>>>
>>>
>>>
>>>
>>>
>>
>>
>>
>>
>>
>
>
>
>
>
This archive was generated by hypermail 2.1.6 : Wed Feb 29 2012 - 15:39:13 CST