writeback periodic cell info in dcd output

From: Marc Q. Ma (qma_at_oak.njit.edu)
Date: Mon Feb 21 2005 - 16:16:01 CST

• Next message: Jérôme Hénin: "Re: writeback periodic cell info in dcd output"
• Previous message: Gan, Yong \(UMC-Student\): "Lipid membrane simulation by NAMD"
• Next in thread: Jérôme Hénin: "Re: writeback periodic cell info in dcd output"
• Reply: Jérôme Hénin: "Re: writeback periodic cell info in dcd output"
• Messages sorted by: [ date ] [ thread ] [ subject ] [ author ] [ attachment ]

Dear everyone,

I am using NAMD2.5 to run simulations with wrapAll turned on and under
periodic conditions. However, it seems that the dcd file does not
contain the periodic cell info. When I load my psf and dcd files to
vmd, and check a, b, c values, they are all 1.

Does anybody know how to set the NAMD options so that the PBC info is
included in the DCD output?

Thanks in advance.

Marc

• Next message: Jérôme Hénin: "Re: writeback periodic cell info in dcd output"
• Previous message: Gan, Yong \(UMC-Student\): "Lipid membrane simulation by NAMD"
• Next in thread: Jérôme Hénin: "Re: writeback periodic cell info in dcd output"
• Reply: Jérôme Hénin: "Re: writeback periodic cell info in dcd output"
• Messages sorted by: [ date ] [ thread ] [ subject ] [ author ] [ attachment ]

This archive was generated by hypermail 2.1.6 : Wed Feb 29 2012 - 15:39:10 CST