how to image molecules back into a PBC box

From: Xiongce Zhao (
Date: Tue Feb 15 2005 - 09:08:21 CST

Hi, Dear All,

I simulate a system with Periodic Boundary. The NAMD seems to use the
infinite checkerboard for writing molecule positions in DCD file. It
doesnot matter for simulation, but makes the movie ugly. Any one knows
how to image the molecules back into the box ? Can this be done in NAMD?

Thanks for your help.


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