Re: Re: Compiling NAMD on IA64 cluter

From: Gengbin Zheng (gzheng_at_ks.uiuc.edu)
Date: Wed Nov 03 2004 - 11:24:27 CST

Can't tell for sure what happened here because of the strange charaters.
However, if -lgm is the error, you should not be able to compiler
megatest since they both use the same charmc. Have you pointed charmc
(charm home) to the right place?

Gengbin

Brian Bennion wrote:

>hello,
>
>In the email you sent below, I see a bunch of random characters. Is this
>what you see on your terminal as well?
>
>The critical error here is the "-lgm" switch that linker cannot parse.
>Somewhere the path to the gm library is not correctly implemented in NAMD.
>Unfortunately I am clueless about compiling myrinet versions of namd.
>
>Gengbin can you say something here?
>
>Brian
>
>
>On Wed, 3 Nov 2004, li wrote:
>
>
>
>>Replyed From: li <zlee_at_ustc.edu>
>>
>>Hi,Brian :
>> I have successed in building charm++ using ecc with gm (gm1.6.5)option,and the megatest is also ok , but finnally failed with infomation like below when compiling NAMD:
>>
>>...........
>>ld: cannot find -lgm
>>Fatal Error by charmc in directory
>>/home/public/compchem/namd/NAMD_2.5_Source/Linux-ia64-GM-ecc
>> Command ecpc -L/usr/gm/lib -O2 -ftz
>>-L/home/public/compchem/namd/tcl/linux/lib -L/home/public/compchem/tcl/lib
>>-L/home/public/compchem/namd/fftw/linuxia64/lib -L/fftw-linux/lib
>>-L/home/public/compchem/namd/plugins/LINUXIA64
>>-L/home/public/compchem/namd/plugins/LINUXIA64/molfile
>>-L/home/public/compchem/plugins/LINUXIA64
>>-L/home/public/compchem/plugins/LINUXIA64/molfile
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>>>*****************************************************************
>>>**Brian Bennion, Ph.D. **
>>>**Computational and Systems Biology Division **
>>>**Biology and Biotechnology Research Program **
>>>**Lawrence Livermore National Laboratory **
>>>**P.O. Box 808, L-448 bennion1_at_llnl.gov **
>>>**7000 East Avenue phone: (925) 422-5722 **
>>>**Livermore, CA 94550 fax: (925) 424-6605 **
>>>*****************************************************************
>>>
>>>
>>>
>>>
>>--
>>USTC Alumni Email System
>>
>>
>>
>>
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>
>*****************************************************************
>**Brian Bennion, Ph.D. **
>**Computational and Systems Biology Division **
>**Biology and Biotechnology Research Program **
>**Lawrence Livermore National Laboratory **
>**P.O. Box 808, L-448 bennion1_at_llnl.gov **
>**7000 East Avenue phone: (925) 422-5722 **
>**Livermore, CA 94550 fax: (925) 424-6605 **
>*****************************************************************
>
>
>

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