From: Brian Bennion (brian_at_youkai.llnl.gov)
Date: Thu Jul 22 2004 - 11:21:34 CDT
My best guess here
Try just -pthread ie remove the l
On Thu, 22 Jul 2004, Hrant Gharabekyan wrote:
> I compiled charm ++
> ./build charm++ mpi-linux gm --basedir /opt/mpich-gm-1.2.5-12/
> builded normalyy, megatest passed normally for 4 nodes.
>
> Configuring Namd ./config tcl fftw Linux-i686-MPI
> When I trying compile Namd 2.5 without any changes in makefile
> output is :
> /home/sicnas/Hrant/Namd/TCL/lib/libtcl8.3.a(tclUnixPipe.o)(.text+0xe2): In function `TclpCreateTempFile':
> : the use of `tmpnam' is dangerous, better use `mkstemp'
> /opt/mpich-gm-1.2.5-12/lib/libmpich.a(gmpi_malloc.o)(.text+0x64): In function `malloc_atfork':
> : undefined reference to `pthread_self'
> /opt/mpich-gm-1.2.5-12/lib/libmpich.a(gmpi_malloc.o)(.text+0xcf): In function `malloc_atfork':
> : undefined reference to `pthread_mutex_lock'
> /opt/mpich-gm-1.2.5-12/lib/libmpich.a(gmpi_malloc.o)(.text+0xd7): In function `malloc_atfork':
> : undefined reference to `pthread_mutex_unlock'
> /opt/mpich-gm-1.2.5-12/lib/libmpich.a(gmpi_malloc.o)(.text+0x135): In function `free_atfork':
> : undefined reference to `pthread_self'
> /opt/mpich-gm-1.2.5-12/lib/libmpich.a(gmpi_malloc.o)(.text+0x152): In function `free_atfork':
> : undefined reference to `pthread_mutex_lock'
> .....
> exit with error.
>
> I tryed changes in makefile (but in wiki writed that that changes for
> GM 2), in all cases I tryed.
> CXXFLAGS = $(CXXBASEFLAGS) $(CXXOPTS) -lpthread
> output is same.
>
> I read in wiki there writen
> --with-device=ch_gm:-disable-registration when configuring MPICH-GM
> but my MPICH-GM already installed, and I haven't any possibility to
> change it.
>
> Is there any possible solution for my problem.
>
> A lot of Thank's
>
> Hrant
>
>
*****************************************************************
**Brian Bennion, Ph.D. **
**Computational and Systems Biology Division **
**Biology and Biotechnology Research Program **
**Lawrence Livermore National Laboratory **
**P.O. Box 808, L-448 bennion1_at_llnl.gov **
**7000 East Avenue phone: (925) 422-5722 **
**Livermore, CA 94550 fax: (925) 424-6605 **
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