From: Brian Bennion (brian_at_youkai.llnl.gov)
Date: Wed Jul 21 2004 - 18:23:41 CDT
Hi Ken,
You can use psfgen this way, but it still requires that at least 3 atoms
in each residue have some coordinates so it can guess the rest. If no
coordinates are given psfgen will choke, based on my past experience...
On
Wed, 21 Jul 2004, Ken Sale wrote:
> Is there a way to use psfgen to add missing residues to a protein structure?
> I am trying to add 3 missing N-term residues to a protein. I suppose I could
> add an atom for each residue to the PDB with no coordinates and let psfgen
> guess them, but I am hoping there is an easier way like simply providing the
> sequence.
>
> Thanks,
>
> Ken
>
*****************************************************************
**Brian Bennion, Ph.D. **
**Computational and Systems Biology Division **
**Biology and Biotechnology Research Program **
**Lawrence Livermore National Laboratory **
**P.O. Box 808, L-448 bennion1_at_llnl.gov **
**7000 East Avenue phone: (925) 422-5722 **
**Livermore, CA 94550 fax: (925) 424-6605 **
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