From: Gengbin Zheng (gzheng_at_ks.uiuc.edu)
Date: Wed Apr 07 2004 - 20:10:12 CDT
Hi Ken,
Do you actually have this directory:
/home/fajer/NAMD_2.5_Source/charm/net-linux/include
as in Make.charm,
or did you compile charm?
Gengbin
On Wed, 7 Apr 2004, Ken Sale wrote:
> I am trying to compile NAMD on a cluster under MPI. I downloaded, compiled
> and tested charm++ and had no problems. I downloaded the precompiled tcl,
> fftw and plugins. I then edited Make.charmm, Linux-i686.fftw,
> All-Unix.plugins and Linux-i686.tcl files as outlined in notes. Then I ran
> ./config tcl fftw plugins Linux-i686-g++, switched to that directory and ran
> make. I am getting the following output indicating that charm++.h and
> converse.h do not exist. I've checked the include directory in .rootdir and
> they are there.
>
>
>
> g++ -DSOCKLEN_T=socklen_t -DNO_STRSTREAM_H
> -I/home/fajer/NAMD_2.5_Source/charm/net-linux/include -DCMK_OPTIMIZE=1 -Isrc
> -Iinc -I/home/fajer/vmd-plugins/LINUX
> -I/home/fajer/vmd-plugins/LINUX/molfile -I/home/fajer/vmd-plugins/include
> -I/home/fajer/plugins/LINUX -I/home/fajer/plugins/LINUX/molfile
> -I/home/fajer/plugins/include -DNAMD_PLUGINS
> -I/home/fajer/linux-redhat9/include -I/home/fajer/tcl-linux/include
> -DNAMD_TCL -DUSE_NON_CONST -I/home/fajer/linux-redhat9//include
> -I/home/fajer/fftw-linux/include -DNAMD_FFTW -DNAMD_VERSION=\"2.5\"
> -DNAMD_PLATFORM=\"Linux-i686\" -g -o obj/common.o -c src/common.C
>
> src/common.C:11:21: charm++.h: No such file or directory
>
> src/common.C:12:22: converse.h: No such file or directory
>
> In file included from /usr/include/c++/3.2.2/backward/strstream:51,
>
> from src/InfoStream.h:20,
>
> from src/common.C:23:
>
> /usr/include/c++/3.2.2/backward/backward_warning.h:32:2: warning: #warning
> This file includes at least one deprecated or antiquated header. Please
> consider using one of the 32 headers found in section 17.4.1.2 of the C++
> standard. Examples include substituting the <X> header for the <X.h> header
> for C++ includes, or <sstream> instead of the deprecated header
> <strstream.h>. To disable this warning use -Wno-deprecated.
>
> src/common.C: In function `void NAMD_quit(int)':
>
> src/common.C:73: `CmiAbort' undeclared (first use this function)
>
> src/common.C:73: (Each undeclared identifier is reported only once for each
>
> function it appears in.)
>
> src/common.C: In function `void NAMD_die(const char*)':
>
> src/common.C:84: `CkPrintf' undeclared (first use this function)
>
> make: *** [obj/common.o] Error 1
>
>
>
> Thanks for any help,
>
>
>
> Ken
>
>
Gengbin Zheng
============
(217)244-3667 (o)
gzheng_at_uiuc.edu
zhenggb_at_acm.org
http://www.ks.uiuc.edu/~gzheng/personal.html
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