From: Ruxandra Dima (dimar_at_Glue.umd.edu)
Date: Tue Dec 28 2004 - 22:48:43 CST
Hello,
I have problems using the Namd-2.5 precompiled binaries on a Fedora Core 3
workstation. My runs terminate randomly with the error
Stack Traceback:
[0] _ZN16ComputePatchPair6doWorkEv+0xa4 [0x8192b34]
[1] _ZN11WorkDistrib12enqueueWorkBEP12LocalWorkMsg+0x19 [0x824b9cd]
[2]
_ZN19CkIndex_WorkDistrib31_call_enqueueWorkB_LocalWorkMsgEPvP11WorkDistrib+0x11
[0x824b9ad]
[3] CkDeliverMessageFree+0x21 [0x827c1f9]
[4] _Z15_processHandlerPvP11CkCoreState+0x393 [0x827d5e3]
[5] CmiHandleMessage+0x1d [0x82b5e25]
[6] _ZN9ScriptTcl7suspendEv+0xc [0x8228c68]
[7] _ZN9ScriptTcl13runControllerEi+0x3f [0x8228c4f]
[8] _ZN9ScriptTcl7Tcl_runEPvP10Tcl_InterpiPPc+0xf4 [0x82292cc]
[9] TclInvokeStringCommand+0x6d [0x82c5145]
[10] /home/dimar/NAMD/NAMD_2.5_Linux-i686/namd2 [0x82f946a]
[11] Tcl_EvalEx+0x1cc [0x82f9b7c]
[12] Tcl_EvalFile+0x157 [0x82f1ce3]
[13] _ZN9ScriptTcl3runEPc+0x1a [0x8228b76]
[14] main+0x1d2 [0x80ed052]
[15] __libc_start_main+0xe3 [0x7b4e33]
[16] sinh+0x65 [0x80eaed1]
The same runs worked fine on Fedora Core 1 on the same workstation.
I also tried unsuccessfully to compile Namd from source on Fedora Core 3
(gcc-3.4.2). Charm compilation fails with the message:
In file included from ccs-builtins.C:11:
ckhashtable.h: In member function `OBJ CkHashtableT<KEY, OBJ>::get(const
KEY&) const':
ckhashtable.h:302: error: `len' undeclared (first use this function)
ckhashtable.h:302: error: (Each undeclared identifier is reported only
once for each function it appears in.)
ckhashtable.h:304: error: there are no arguments to `entry' that depend on
a template parameter, so a declaration of `entry' must be available
ckhashtable.h:304: error: (if you use `-fpermissive', G++ will accept your
code, but allowing the use of an undeclared name is deprecated)
ckhashtable.h:306: error: `layout' undeclared (first use this function)
ckhashtable.h:310: error: there are no arguments to `inc' that depend on a
template parameter, so a declaration of `inc' must be available
ckhashtable.h: In member function `OBJ& CkHashtableT<KEY,
OBJ>::getRef(const KEY&)':
ckhashtable.h:316: error: `len' undeclared (first use this function)
ckhashtable.h:318: error: there are no arguments to `entry' that depend on
a template parameter, so a declaration of `entry' must be available
ckhashtable.h:320: error: `layout' undeclared (first use this function)
ckhashtable.h:322: error: there are no arguments to `inc' that depend on a
template parameter, so a declaration of `inc' must be available
In file included from ccs-builtins.C:12:
pup.h: In member function `CkReference<T>::operator T&()':
pup.h:662: error: there are no arguments to `peek' that depend on a
template parameter, so a declaration of `peek' must be available
Fatal Error by charmc in directory
/tmp/NAMD_2.5_Source/charm/net-linux/tmp
Command g++ -Wno-deprecated -D__CHARMC__=1 -DCMK_OPTIMIZE=1 -O
-I../bin/../include -c ccs-builtins.C -o ccs-builtins.o returned error
code 1
charmc exiting...
make: *** [ccs-builtins.o] Error 1
I would appreciate any suggestions.
Thanks,
Ruxandra
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