Re: fatal error

From: vivek sharma (vivek.sharma_at_helsinki.fi)
Date: Wed Dec 15 2004 - 04:11:45 CST

Hello everybody,

Thanks for all your suggestions. Problem is solved now. Actually we have
AFS file server here, which issues tokens for being logged into it for
particular amount of time. My simulations are longer than that, as a
result my system got logged off after alotted time and program failed to
write the log file, etc to the directory and consequently gave such error.
Now it runs fine.
I have a solution for that now.

Thanks once again, I will be in touch with you with all coming concerns.

Regards,

Vivek

Quoting nordgren_at_sas.upenn.edu:

> Vivek,
>
> So, the error of "No such file or directory" would seem to indicate a
> basic
> Unix problem, like a typo in the filename of your config file or the
> NAMD
> executable? Or maybe you are issuing the command from the wrong
> directory?
>
> Can you confirm for us that no simple (and all-too-easy to make!) error
> such
> as this is at work?
>
> -Erik
>
> C. Erik Nordgren, Ph.D.
> Department of Chemistry
> University of Pennsylvania
>
>
> Quoting vivek sharma <vivek.sharma_at_helsinki.fi>:
>
> > Dear NAMD people,
> >
> > I am running dynamics on a system of >20000 atoms for 50ps with 1fs
> time
> > step.
> > After running some time the program stops with this fatal error (shown
> > below). I dont think this is some software problem, but probably
> something
> > else.
> >
> > Actually I have installed NAMD on my linux but usually run it on a
> linux
> > cluster by ssh'ing' to the cluster for faster computation. But it
> stopped
> > with this error in console.
> >
> >
> > --------------this is the error with which program
> > stops--------------------
> >
> > $ nice /bin/NAMD_2.5_Linux-i686/namd2 config_another.txt >
> > config_another.log
> > ------------- Processor 0 Exiting: Called CmiAbort ------------
> > Reason: FATAL ERROR: No such file or directory
> >
> > Bus error
> >
> >
> -------------------------------------------------------------------------

---
> > 
> > Please suggest, what can be the problem?
> > 
> > Thanks in advance, 
> > 
> > Vivek Sharma
> > 
> > -- 
> > VIVEK SHARMA
> > HBG BI
> > "You must be the change you wish to see in the world."
> >                                                    MKG
> > 
> 
> 
> 
-- 
VIVEK SHARMA
HBG BI
"You must be the change you wish to see in the world."
                                                   MKG

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