From: Gianluca Interlandi (gianluca_at_bioc.unizh.ch)
Date: Tue Dec 14 2004 - 06:06:03 CST
Dear NAMD users,
I have two independent questions:
1) Are there any experiences about the scalability running NAMD on
infiniband? I have been running NAMD on myrinet and, as an example, for
a system with 51000 atoms I get a seedup of 14 on 16 CPUs (dual opteron
1800+).
2) What is recommended for a PME gridsize? One of my boxes has a
sidelength of 99.2 A. What is the "ideal" gridsize in this case?
Many thanks,
Gianluca
-----------------------------------------------------
Gianluca Interlandi gianluca_at_bioc.unizh.ch
+41 (0) 1 635 55 93
+41 (0)79 655 73 35
http://biocroma.unizh.ch/gianluca/
PhD-Student of the Department of Biochemistry
at the University of Zurich Irchel, Switzerland
-----------------------------------------------------
This archive was generated by hypermail 2.1.6 : Wed Feb 29 2012 - 15:38:04 CST