How to decide the protonation of some residues??

From: mashaojie163 (mashao_jie_at_163.com)
Date: Wed Nov 03 2004 - 07:05:19 CST

Hi:
   I know you should construct the model with correct protonation state if you want to do simulation in some acid solvate. Do you tell me how to decide the protonation of some residue, for example HIS, Asp, Tyr, Arg, Leu, Glu .etc.
   Best regards
                             Ma Shaojie
 

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