Fwd: missing atom prob

From: surendra negi (negi009_at_yahoo.com)
Date: Mon Nov 01 2004 - 17:58:33 CST

Note: forwarded message attached.

                
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Hi,

 I am getting following error mesaage n hence missing
many atoms in final pdb/psf files. Is there ny
solution for this?

best, sn

Warning: failed to set coordinate for atom HB3
GLU:330 1COM
Warning: failed to set coordinate for atom HG3
GLU:330 1COM
Warning: failed to set coordinate for atom HB3
PRO:332 1COM
Warning: failed to set coordinate for atom HG3
PRO:332 1COM
Warning: failed to set coordinate for atom HD3
PRO:332 1COM
Warning: failed to set coordinate for atom HB3
GLU:333 1COM
Warning: failed to set coordinate for atom HG3
GLU:333 1COM
Warning: failed to set coordinate for atom HB3
ARG:334 1COM
Warning: failed to set coordinate for atom HG3
ARG:334 1COM
Warning: failed to set coordinate for atom HD3
ARG:334 1COM
Warning: failed to set coordinate for atom HH1
ARG:334 1COM
Warning: failed to set coordinate for atom HH1
ARG:334 1COM
Warning: failed to set coordinate for atom HH2
ARG:334 1COM
Warning: failed to set coordinate for atom HH2
ARG:334 1COM
Warning: failed to set coordinate for atom HB3
SER:336 1COM
Warning: failed to set coordinate for atom HG
SER:336 1COM
Warning: failed to set coordinate for atom HB3
SER:337 1COM
Warning: failed to set coordinate for atom HG
SER:337 1COM
Warning: failed to set coordinate for atom HG1
VAL:338 1COM
Warning: failed to set coordinate for atom HG1
VAL:338 1COM
Warning: failed to set coordinate for atom HG1
VAL:338 1COM
Warning: failed to set coordinate for atom HG2
VAL:338 1COM
Warning: failed to set coordinate for atom HG2
VAL:338 1COM
Warning: failed to set coordinate for atom HG2
VAL:338 1COM
Warning: failed to set coordinate for atom HB3
TYR:339 1COM
Warning: failed to set coordinate for atom HG2
THR:340 1COM
Warning: failed to set coordinate for atom HG2
THR:340 1COM
Warning: failed to set coordinate for atom HG2
THR:340 1COM
Warning: failed to set coordinate for atom O
ARG:341 1COM
Warning: failed to set coordinate for atom HB3
ARG:341 1COM
Warning: failed to set coordinate for atom HG3
ARG:341 1COM
Warning: failed to set coordinate for atom HD3
ARG:341 1COM
Warning: failed to set coordinate for atom HH1
ARG:341 1COM
Warning: failed to set coordinate for atom HH1
ARG:341 1COM
Warning: failed to set coordinate for atom HH2
ARG:341 1COM
Warning: failed to set coordinate for atom HH2
ARG:341 1COM

                
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