From: John Stone (johns_at_ks.uiuc.edu)
Date: Tue Aug 31 2004 - 15:11:47 CDT
Hi,
Which rmsd.tcl script are you using, and with which version of VMD?
John Stone
vmd_at_ks.uiuc.edu
On Thu, Aug 26, 2004 at 12:10:05PM -0700, bora erdemli wrote:
>
> Hi,
> I use the rmsd.tcl script which is in the VMD website.
> ýt works well for the whole protein but when I try to
> calculate the rmsd of a residue or sidechain of it it
> gave me unexpectedly small rmsd .
> Is there anybody who has an idea that what the reason
> of it and have any sugestion ?
> thanks in advance....
>
> Bora
> Koc University
> Computational Science and Engineering
> Istanbul,Turkey
>
>
>
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-- NIH Resource for Macromolecular Modeling and Bioinformatics Beckman Institute for Advanced Science and Technology University of Illinois, 405 N. Mathews Ave, Urbana, IL 61801 Email: johns_at_ks.uiuc.edu Phone: 217-244-3349 WWW: http://www.ks.uiuc.edu/~johns/ Fax: 217-244-6078
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