From: Sichun Yang (syang_at_physics.ucsd.edu)
Date: Fri Jun 11 2004 - 21:44:12 CDT
Gengbin,
Thank you for your quick response.
In fact, I have talked with the sysad about the passwordless login.
After we tested it and we can submit interactive jobs (e.g: qsub -I).
And the jobs can get through if we replace the "charmrun" line with a
"sleep 100" in the submit script, which might remind us that it is due to
the "charmrun". Any further suggestion or hint?
Thanks,
-Sichun
On Fri, 11 Jun 2004, Gengbin Zheng wrote:
>
> Hi Sichun,
>
> The NAMD binary you compiled is just a MPI program. You have to figure out
> how to run a MPI program (with Myrinet) with your administrator. It is
> very likely that you can not run your job interactively, you have to
> submit the job via some job scheduler.
>
> Gengbin
>
> On Fri, 11 Jun 2004, Sichun Yang wrote:
>
> >
> > Follow up my last email.
> >
> > I have been compiling charm++ for NAMD on ia64.
> > It went through using the "./build charm++ mpi-linux-ia64 gm -O
> > -DCMK_OPTIMIZE=1".
> >
> > However, the megatest failed when I try to have a test run on 4
> > processors,
> > it asks for passwords.
> > Any suggestion is welcome. Thanks,
> > -Sichun
> >
> > charm++/megatest> ./charmrun +p4 ./pgm
> > Running on 4 processors: ./pgm
> > Password: Password: Password: Password:
> >
> >
> > On Fri, 11 Jun 2004, Sichun Yang wrote:
> >
> > >
> > > Dear all,
> > >
> > > when i try to install charm,
> > > here are my error messages. any suggestion is welcome.
> > > Thanks,
> > > -Sichun
> > >
> > >
> > > NAMD_2.5_Source/charm> ./build charm++ net-linux -O -DCMK_OPTIMIZE=1
> > > Copying src/scripts/Makefile to net-linux/tmp
> > > Soft-linking over bin
> > > Soft-linking over lib
> > > Soft-linking over lib_so
> > > Soft-linking over include
> > > Soft-linking over tmp
> > > Generating net-linux/tmp/conv-mach-pre.sh
> > > Performing 'make charm++ OPTS= -O -DCMK_OPTIMIZE=1' in net-linux/tmp
> > > touch basics
> > > ../bin/charmc -O -DCMK_OPTIMIZE=1 -build-shared convcore.c
> > > convcore.c: In function `CmiTimerInit':
> > > converse.h:424: inconsistent operand constraints in an `asm'
> > > converse.h:424: inconsistent operand constraints in an `asm'
> > > converse.h:424: inconsistent operand constraints in an `asm'
> > > converse.h:424: inconsistent operand constraints in an `asm'
> > > converse.h:424: inconsistent operand constraints in an `asm'
> > > Fatal Error by charmc in directory
> > > /users/ux453965/soft/NAMD_2.5_Source/charm/net-linux/tmp
> > > Command gcc -D__CHARMC__=1 -DCMK_OPTIMIZE=1 -O -I../bin/../include -c
> > > convcore.c -o convcore.o returned error code 1
> > > charmc exiting...
> > > make: *** [convcore.o] Error 1
> > > -------------------------------------------------
> > > Charm++ NOT BUILT. Either cd into net-linux/tmp and try
> > > to resolve the problems yourself, visit
> > > http://charm.cs.uiuc.edu/
> > > for more information. Otherwise, email the developers at ppl_at_cs.uiuc.edu
> > >
> > >
> >
>
>
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