RE: how to generate your own pdb file

From: Ahmet Bakan (
Date: Fri May 14 2004 - 21:55:28 CDT


You can try using HyperChem which is available for Windows. It has 30 days
evaluation period. You can download it from the below address:
I prepare novel compounds and large protein structures using this tool.
However, the PDB files that I generate need some modifications. If you have
not experienced, I suggest you using TextPad 4.72 which is a quite powerful
text editor for Windows. This program sometimes reminds you to buy a
lisence. Here it's address:


Ahmet Bakan
Chemistry, Junior
Koc University
ICQ #86167698

-----Original Message-----
From: [] On Behalf
Of Tim Isgro
Sent: Saturday, May 15, 2004 1:26 AM
To: myang
Subject: Re: namd-l: how to generate your own pdb file

I know the programs MOE and SPARTAN will allow you to generate structures,
and save them as a pdb. You can energy minimize, too. Neither is free,

On Wed, 12 May 2004, myang wrote:

> Hi
> I have a question. Now I want to generate my own .pdb file
> For example: a nanotube
> Does anyone know some software to generate pdb file.
> Or one must generate by himself
> mo

This archive was generated by hypermail 2.1.6 : Wed Feb 29 2012 - 15:37:36 CST