From: Olya Kravchenko (okrav_at_ucdavis.edu)
Date: Fri Apr 23 2004 - 11:32:52 CDT
> 2. Could NAMD work with other force fields, except CHARMM?
As far as I'm aware of it works with Amber, X-PLOR and Gromacs. See namd
http://www.ks.uiuc.edu/Research/namd/current/ug/ --> input and output files.
> 3. How we could generate psf file using psfgen, since it does not work
> as an executable, is there some specific commands?
I use vmd plugin to run psfgen. You need to prepare *.pgn file ( see tutorial:
and then use the following command: vmd -dispdev text -e your_file.pgn
Hope that helps.
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