Re: Compiling NAMD on amd64

From: Wenyu Zhong (
Date: Thu Apr 15 2004 - 06:35:08 CDT

 Another question in compiling i686-icc version namd.
 I tried to compile i686-tcp-smp version NAMD, and after resolving several problems, I got it.
    But when I tried to run it,I meet the below errors:
error while loading shared libraries: cannot open shared object file: No such file or directory => /lib/tls/ (0xb75c0000) => /lib/tls/ (0xb75b0000) => /lib/ (0xb75ad000) => /usr/lib/ (0xb759f000) => not found => not found => not found => not found => /lib/tls/ (0xb7466000)
 /lib/ => /lib/ (0xb75eb000)
Charmrun rsh(compute-0-21.local.0)> Exiting with error code 1

Best regards.
Wenyu Zhong

----- Original Message -----
From: "Wenyu Zhong" <>
To: <>
Sent: Thursday, April 15, 2004 2:42 PM
Subject: namd-l: Compiling NAMD on amd64

> Hi,everyone!
> I have tried compiling NAMD 2.5 on opteron 242(1.6G), Rocks3.1.0 x86_64(RedHat 2.1EL).I compiled a Linux-amd64-g++ version successfully and it achived about 5.4s/step in running apoa1 benchmark .it is little slower than 5.1s/step got by the standard NAMD_2.5_Linux binary running on Xeon 2.4G.
> How do you think about the performance of the Linux-amd64-g++ version? Is there any optimization I should do? Do you think other compliers like pgcc will do much more better than gcc?
> Best regards!
> Wenyu Zhong

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