RE: Urea and GdHCl parameters

From: Ahmet Bakan (
Date: Mon Mar 15 2004 - 13:15:18 CST

Hi Ruxanda,

I have some topology files, one for Dimetyl Urea and necessary parameters.
Parameters are derived from similar parameters for amino acids and some from
COMPASS forcefield. Also, there is a guide for topology file and parameter
generation. You can try those materials and let me know if I can help


Ahmet Bakan
Chemistry, Junior
Koc University
ICQ #86167698
-----Original Message-----
From: [] On Behalf
Of Ruxandra Dima
Sent: Monday, March 15, 2004 8:02 PM
Subject: namd-l: Urea and GdHCl parameters

Hi All,

Does anyone know where from can I get the topology file and energy
parameters for Urea and Guanidinium Hydrochloride (to use with NAMD)?

Thank you in advance,


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