electron density calculations of lipid bilayers

From: Satyavani Vemparala (vani_at_VITAE.CMM.UPENN.EDU)
Date: Sun Feb 22 2004 - 17:45:58 CST

Hello all:

I am trying to calculate the electron density profiles (EDP) of the lipid
bilayers, and i would like to average this over different frames in the
DCD files. Is the atom type included in DCD files? if so how to extract
the info? I want to extract the atom type, and the corresponding XYZ info.

Also does anyone has a code to calculate the EDP using the NAMD DCD files?

Any pointers in this direction would be greatly appreciated!


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