How do we combine chains in the end

From: Uday Chippada (
Date: Sat Jan 31 2004 - 11:37:42 CST

Hi all,

When we do minimization and equilibration for protein complexes with
chains A, B and C etc. we use

set chainA [atomselect top "chain A"]
$chainA writepdb chainA.pdb
etc ..

to divide the original pdb file into seperate chains and then do the
equilibration. Now, my question is how do we combine these together, in
the end, to know the displacement of an atom when a force is applied,
with all three chains together?

Any help is appreciated.

Thank you.
Uday Chippada.

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