From: himanshu chandola (beu99419_at_ccsun50.iitd.ernet.in)
Date: Wed Nov 19 2003 - 11:32:17 CST
hi all,
What Zhu has said - that's the solution more or less. Below is the
part of the solution i got from Dr. Mackerell.
I have made the changes but still one small error remains -
"
CAN'T FIND BOND PARAMETERS FOR BOND CN7B - CN7B IN PARAMETER FILES
"
am looking out for it wat went wrong.
himanshu
It is a simple fix, as follows.
in ATP or ADP (or G etc.) change the following atom types
ATOM C2' CN7 0.14 !
to
ATOM C2' CN7B 0.14 !
and
ATOM C5' CN8 -0.08
to
ATOM C5' CN8B -0.08
and everything should be fine.
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