Small Organic Compounds with NAMD

From: AHMET BAKAN (ABAKAN_at_KU.EDU.TR)
Date: Sat Oct 18 2003 - 18:40:37 CDT

Hi,
I do some molecular dynamics on small organic compounds in periodic boundary conditions. I had a question previously on generating structure file for my compounds and I had a useful advice.
Now, I wonder how accurate using CHARMM 22 parameter set for proteins is. Is there any other set that is applicable to my urea or 2-propanol like compounds? Any advice would be appreciated. Thanks,
AB
==============ABC==============
Ahmet BAKAN
Chemistry, Junior
Koc University
abakan_at_ku.edu.tr
ICQ #86167698
http://home.ku.edu.tr/~abakan

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