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Potential energy functions
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NAMD 3.0alpha User's Guide
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Example of a Session
Force Field Parameters
Subsections
Potential energy functions
Bonded potential energy terms
Nonbonded potential energy terms
Non-bonded interactions
Van der Waals interactions
Electrostatic interactions
Non-bonded force field parameters
PME parameters
MSM parameters
Full direct parameters
Tabulated nonbonded interaction parameters
Water Models
Drude polarizable force field
Required input files
Standard output
Drude force field parameters
MARTINI Residue-Based Coarse-Grain Forcefield
Constraints and Restraints
Bond constraint parameters
Position restraint parameters
Group position restraint parameters
Fixed atoms parameters
Extra bond, angle, and dihedral restraints
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