Class PubSynchBean

java.lang.Object
  |
  +--java.awt.Component
        |
        +--java.awt.Container
              |
              +--java.awt.Panel
                    |
                    +--PubSynchBean

All Implemented Interfaces:

javax.accessibility.Accessible, java.awt.image.ImageObserver, java.awt.MenuContainer, java.io.Serializable

public class PubSynchBean

extends java.awt.Panel

implements java.io.Serializable

This Bean allows users to save the current JMV state, and load that state later.

See Also:

Serialized Form

Inner Class Summary

class	PubSynchBean.DrawAtoms Holder class for atom drawing info
class	PubSynchBean.PubSynchListener ActionListener class for the buttons

Inner classes inherited from class java.awt.Panel

java.awt.Panel.AccessibleAWTPanel

Inner classes inherited from class java.awt.Container

java.awt.Container.AccessibleAWTContainer

Inner classes inherited from class java.awt.Component

java.awt.Component.AccessibleAWTComponent

Fields inherited from class java.awt.Component

BOTTOM_ALIGNMENT, CENTER_ALIGNMENT, LEFT_ALIGNMENT, RIGHT_ALIGNMENT, TOP_ALIGNMENT

Fields inherited from interface java.awt.image.ImageObserver

ABORT, ALLBITS, ERROR, FRAMEBITS, HEIGHT, PROPERTIES, SOMEBITS, WIDTH

Constructor Summary

PubSynchBean()
Constructor

Method Summary

void	addPropertyChangeListener(java.beans.PropertyChangeListener l) Adds a PropertyChangeListener to the PropertyChangeSupport, to send property changes on mouse events (button clicks, etc.)
java.lang.String	getSynchFilename() Gets the filename of the last published molecule
void	guiInit() Initialize user interface
void	publish(java.lang.String fileName) Publishes the current JMV state to the specified file It writes the filename, representation, colorscheme, gradient, and the matrix coordinates of the molecule transformation.
void	removePropertyChangeListener(java.beans.PropertyChangeListener l) Removes a PropertyChangeListener from the PropertyChangeSupport
void	setParams(javax.media.j3d.TransformGroup trans, Molecule molec, java.lang.String filename, int rep, int colorScheme, int gradient) Sets the parameters for publishing
void	setSynchFilename(java.lang.String filename) sets the filename of the molecule
void	synch(java.lang.String filename) Loads the last published state from the specified file.
void	synchMulti(java.lang.String filename) Loads a file with different atom representations, colors, etc.

Methods inherited from class java.awt.Panel

addNotify, getAccessibleContext

Methods inherited from class java.awt.Container

add, add, add, add, add, addContainerListener, addImpl, countComponents, deliverEvent, doLayout, findComponentAt, findComponentAt, getAlignmentX, getAlignmentY, getComponent, getComponentAt, getComponentAt, getComponentCount, getComponents, getInsets, getLayout, getListeners, getMaximumSize, getMinimumSize, getPreferredSize, insets, invalidate, isAncestorOf, layout, list, list, locate, minimumSize, paint, paintComponents, paramString, preferredSize, print, printComponents, processContainerEvent, processEvent, remove, remove, removeAll, removeContainerListener, removeNotify, setFont, setLayout, update, validate, validateTree

Methods inherited from class java.awt.Component

action, add, addComponentListener, addFocusListener, addHierarchyBoundsListener, addHierarchyListener, addInputMethodListener, addKeyListener, addMouseListener, addMouseMotionListener, addPropertyChangeListener, bounds, checkImage, checkImage, coalesceEvents, contains, contains, createImage, createImage, disable, disableEvents, dispatchEvent, enable, enable, enableEvents, enableInputMethods, firePropertyChange, getBackground, getBounds, getBounds, getColorModel, getComponentOrientation, getCursor, getDropTarget, getFont, getFontMetrics, getForeground, getGraphics, getGraphicsConfiguration, getHeight, getInputContext, getInputMethodRequests, getLocale, getLocation, getLocation, getLocationOnScreen, getName, getParent, getPeer, getSize, getSize, getToolkit, getTreeLock, getWidth, getX, getY, gotFocus, handleEvent, hasFocus, hide, imageUpdate, inside, isDisplayable, isDoubleBuffered, isEnabled, isFocusTraversable, isLightweight, isOpaque, isShowing, isValid, isVisible, keyDown, keyUp, list, list, list, location, lostFocus, mouseDown, mouseDrag, mouseEnter, mouseExit, mouseMove, mouseUp, move, nextFocus, paintAll, postEvent, prepareImage, prepareImage, printAll, processComponentEvent, processFocusEvent, processHierarchyBoundsEvent, processHierarchyEvent, processInputMethodEvent, processKeyEvent, processMouseEvent, processMouseMotionEvent, remove, removeComponentListener, removeFocusListener, removeHierarchyBoundsListener, removeHierarchyListener, removeInputMethodListener, removeKeyListener, removeMouseListener, removeMouseMotionListener, removePropertyChangeListener, repaint, repaint, repaint, repaint, requestFocus, reshape, resize, resize, setBackground, setBounds, setBounds, setComponentOrientation, setCursor, setDropTarget, setEnabled, setForeground, setLocale, setLocation, setLocation, setName, setSize, setSize, setVisible, show, show, size, toString, transferFocus

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Detail

PubSynchBean

public PubSynchBean()

Constructor

Method Detail

setParams

public void setParams(javax.media.j3d.TransformGroup trans,
                      Molecule molec,
                      java.lang.String filename,
                      int rep,
                      int colorScheme,
                      int gradient)

Sets the parameters for publishing

Parameters:

trans - the TransformGroup affecting the Molecule

molec - the Molecule currently drawn in JMV

filename - the file of the Molecule drawn

getSynchFilename

public java.lang.String getSynchFilename()

Gets the filename of the last published molecule

setSynchFilename

public void setSynchFilename(java.lang.String filename)

sets the filename of the molecule

Parameters:

filename - the new name of the pdb file

guiInit

public void guiInit()

Initialize user interface

publish

public void publish(java.lang.String fileName)

Publishes the current JMV state to the specified file It writes the filename, representation, colorscheme, gradient, and the matrix coordinates of the molecule transformation.

Parameters:

fileName - the file to write to

synchMulti

public void synchMulti(java.lang.String filename)

Loads a file with different atom representations, colors, etc.

Parameters:

filename - the name of the file to load. This type of file will be created with VMD.

synch

public void synch(java.lang.String filename)

Loads the last published state from the specified file.

Parameters:

filename - the name of the jmv saved state file to load

addPropertyChangeListener

public void addPropertyChangeListener(java.beans.PropertyChangeListener l)

Adds a PropertyChangeListener to the PropertyChangeSupport, to send property changes on mouse events (button clicks, etc.)

Overrides:

addPropertyChangeListener in class java.awt.Component

Parameters:

l - the PropertyChangeListener to add the PropertyChangeListener to

removePropertyChangeListener

public void removePropertyChangeListener(java.beans.PropertyChangeListener l)

Removes a PropertyChangeListener from the PropertyChangeSupport

Overrides:

removePropertyChangeListener in class java.awt.Component

Parameters:

l - the PropertyChangeListener to remove the PropertyChangeListener from