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- a -
abset_sel :
Force_t
abset_sel_len :
Force_t
accum :
Force_t
altLoc :
mdio_Pdbatom_t
angle :
ForceParam_t
angle_len :
ForceParam_t
angle_sel :
ForceSelect_t
angle_sel_len :
ForceSelect_t
angleprm :
ForceParam_t
angleprm_len :
ForceParam_t
angular_momentum :
StepSystem_t
approx :
MgridParam_tag
aset_sel :
ForceSelect_t
aset_sel_len :
ForceSelect_t
atom :
StepParam_t
,
ForceParam_t
atom_angle_sel :
Force_t
atom_angle_sel_len :
Force_t
atom_bond_sel :
Force_t
atom_bond_sel_len :
Force_t
atom_dihed_sel :
Force_t
atom_dihed_sel_len :
Force_t
atom_impr_sel :
Force_t
atom_impr_sel_len :
Force_t
atom_len :
ForceParam_t
atomprm :
ForceParam_t
atomprm_len :
ForceParam_t
- b -
bath_temperature :
StepParam_t
bond :
ForceParam_t
bond_len :
ForceParam_t
bond_sel :
ForceSelect_t
bond_sel_len :
ForceSelect_t
bondprm :
ForceParam_t
bondprm_len :
ForceParam_t
boundary :
MgridParam_tag
bres_sel :
ForceSelect_t
bres_sel_len :
ForceSelect_t
bresopts :
ForceParam_t
bset_sel :
ForceSelect_t
bset_sel_len :
ForceSelect_t
bucksafe :
Force_t
- c -
cell_margin :
ForceParam_t
cellstatus :
mdio_DcdHeader_t
center :
MgridParam_tag
,
ForceDomain_t
,
Force_t
cgmin_dis :
StepParam_t
cgmin_eval :
StepParam_t
cgmin_tol :
StepParam_t
chainID :
mdio_Pdbatom_t
charge :
MgridSystem_tag
,
mdio_Pdbatom_t
cnt_steps :
Force_t
compute_force :
StepParam_t
cutoff :
MgridParam_tag
,
ForceParam_t
cutoff_ratio :
ForceParam_t
- d -
delta :
Force_t
delta_dis :
ForceParam_t
dest :
Force_t
dielectric :
ForceParam_t
dihed :
ForceParam_t
dihed_len :
ForceParam_t
dihed_sel :
ForceSelect_t
dihed_sel_len :
ForceSelect_t
dihedprm :
ForceParam_t
dihedprm_len :
ForceParam_t
domain :
Force_t
domain_len_frac :
Force_t
drude_bond_energy :
StepSystem_t
drude_bond_temperature :
StepSystem_t
,
StepParam_t
drude_bond_timescale :
StepParam_t
drude_com_energy :
StepSystem_t
drude_com_temperature :
StepSystem_t
,
StepParam_t
drude_com_timescale :
StepParam_t
drude_extended_energy :
StepSystem_t
drude_multisteps :
StepParam_t
dv3 :
Force_t
- e -
e_angle :
ForceResult_t
e_bond :
ForceResult_t
e_bres :
ForceResult_t
e_buffer :
Force_t
e_dihed :
ForceResult_t
e_elec :
ForceResult_t
e_epot :
ForceResult_t
e_impr :
ForceResult_t
e_vdw :
ForceResult_t
elec_const :
ForceParam_t
,
Force_t
elec_cutoff :
ForceParam_t
elec_cutoff2 :
Force_t
elecopts :
ForceParam_t
element :
mdio_Pdbatom_t
ewald_coef :
ForceParam_t
ewald_grad_coef :
Force_t
excl :
ForceParam_t
excl12 :
Force_t
excl13 :
Force_t
excl14 :
Force_t
excl_len :
ForceParam_t
excl_list :
MgridSystem_tag
,
Force_t
exclpolicy :
ForceParam_t
exclx :
Force_t
exp1 :
ForceParam_t
exp2 :
ForceParam_t
- f -
f_angle :
ForceResult_t
f_bond :
ForceResult_t
f_bres :
ForceResult_t
f_buffer :
Force_t
f_dihed :
ForceResult_t
f_elec :
MgridSystem_tag
,
ForceResult_t
f_impr :
ForceResult_t
f_long :
MgridSystem_tag
f_short :
MgridSystem_tag
f_total :
ForceResult_t
f_vdw :
ForceResult_t
filename :
mdio_ConfigData_t
firststep :
mdio_DcdHeader_t
force :
StepSystem_t
forceObjPtr :
StepParam_t
forcetypes :
ForceParam_t
framestepcnt :
mdio_DcdHeader_t
- g -
gscale :
Force_t
- i -
iCode :
mdio_Pdbatom_t
idmap :
Force_t
impr :
ForceParam_t
impr_len :
ForceParam_t
impr_sel :
ForceSelect_t
impr_sel_len :
ForceSelect_t
imprprm :
ForceParam_t
imprprm_len :
ForceParam_t
init_stepnum :
StepParam_t
initial_temperature :
StepParam_t
inv_denom_switch :
Force_t
inv_elec_cutoff2 :
Force_t
is_alloc_sel :
Force_t
is_bres_term1 :
Force_t
is_bres_term2 :
Force_t
is_domain_update :
Force_t
is_fixed_lattice :
Force_t
is_orthogonal :
Force_t
is_periodic :
Force_t
- k -
k3 :
Force_t
keyword :
mdio_ConfigData_t
kinetic_energy :
StepSystem_t
kinetic_virial :
StepSystem_t
konst1 :
ForceParam_t
konst2 :
ForceParam_t
- l -
len12 :
Force_t
len13 :
Force_t
length :
MgridParam_tag
length1 :
ForceParam_t
length2 :
ForceParam_t
lenx :
Force_t
linear_momentum :
StepSystem_t
linenum :
mdio_ConfigData_t
lowcell :
Force_t
lowerc :
Force_t
lv3 :
Force_t
- m -
mapnb :
Force_t
max_steps :
Force_t
messageObjPtr :
StepParam_t
method :
StepParam_t
minlength :
Force_t
- n -
name :
mdio_Pdbatom_t
natoms :
MgridParam_tag
,
StepParam_t
,
mdio_DcdHeader_t
nbfixprm :
ForceParam_t
nbfixprm_len :
ForceParam_t
ndegfreedom :
StepSystem_t
nfixedatoms :
StepSystem_t
nh_extended_energy :
StepSystem_t
nh_friction_coef :
StepSystem_t
nh_log_s :
StepSystem_t
nh_temperature :
StepParam_t
nh_timescale :
StepParam_t
nlevels :
MgridParam_tag
nrigidwaters :
StepSystem_t
nspacings :
MgridParam_tag
nv3 :
Force_t
- o -
occupancy :
mdio_Pdbatom_t
offset_table :
Force_t
options :
StepParam_t
output_message :
StepParam_t
- p -
param :
Force_t
pos :
MgridSystem_tag
,
StepSystem_t
poswrap :
Force_t
potential_energy :
StepSystem_t
- r -
radius1 :
ForceParam_t
radius2 :
ForceParam_t
random_seed :
StepParam_t
record :
mdio_Pdbatom_t
relaxation_time :
StepParam_t
resName :
mdio_Pdbatom_t
resSeq :
mdio_Pdbatom_t
resultsFreq :
StepParam_t
resultsObjPtr :
StepParam_t
- s -
scaled14 :
Force_t
scaled14_list :
MgridSystem_tag
,
Force_t
scaling14 :
MgridSystem_tag
,
ForceParam_t
segID :
mdio_Pdbatom_t
select :
Force_t
self_alloc :
ForceResult_t
self_alloc_sel :
ForceSelect_t
serial :
mdio_Pdbatom_t
settle_hoh_angle :
StepParam_t
settle_oh_dist :
StepParam_t
shadow_energy :
StepSystem_t
shell_width :
ForceParam_t
short_force :
Mgrid_tag
spacing :
MgridParam_tag
split :
MgridParam_tag
sq_minradius :
Force_t
stepnum :
StepSystem_t
submit_results :
StepParam_t
switch_dist2 :
Force_t
switchdist :
ForceParam_t
- t -
ta3 :
Force_t
tb3 :
Force_t
temperature :
StepSystem_t
tempFactor :
mdio_Pdbatom_t
timestep :
StepParam_t
,
mdio_DcdHeader_t
total_sel :
Force_t
total_sel_len :
Force_t
trpos :
Force_t
- u -
u_angle :
ForceResult_t
u_bond :
ForceResult_t
u_bres :
ForceResult_t
u_buffer :
Force_t
u_dihed :
ForceResult_t
u_elec :
MgridSystem_tag
,
ForceResult_t
u_impr :
ForceResult_t
u_long :
MgridSystem_tag
u_short :
MgridSystem_tag
u_total :
ForceResult_t
u_vdw :
ForceResult_t
- v -
v1 :
ForceDomain_t
v2 :
ForceDomain_t
v3 :
ForceDomain_t
,
Force_t
value :
mdio_ConfigData_t
vdw_cutoff :
ForceParam_t
vdw_cutoff2 :
Force_t
vdwopts :
ForceParam_t
vdwparam :
Force_t
vec1 :
mdio_DcdCell_t
vec2 :
mdio_DcdCell_t
vec3 :
mdio_DcdCell_t
vel :
StepSystem_t
virial :
ForceResult_t
volume :
Force_t
Generated on Thu Feb 7 18:11:42 2008 for MDX by
1.3.9.1