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First time

Begin by doing a copy of the files needed for the tutorial in a directory called in your home directory. In a terminal window, move to this directory by typing:

tbss$>$cd $\sim $/

Copy the needed directory, but instead of typing TOP_DIR, type the location of the Summer School directory tree:

tbss$>$cp -r TOP_DIR/sumschool03/tutorials/02-namd-tutorial/namd-tutorial-files/ ./namd-tutorial-files

For instance, if the materials are located at /mnt/cdrom or at $\sim $/Desktop, replace TOP_DIR by /mnt/cdrom or $\sim $/Desktop. Use this copy of the tutorial files.