Colvar Flat-bottom potential "distanceXY"

From: ROPÓN-PALACIOS G. (biodano.geo_at_gmail.com)
Date: Wed Nov 10 2021 - 12:59:45 CST

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Dear users,

I'm pulling in the direction of Z, so I want to apply harmicWalls so that the protein confines in a certain radius, but I don't really understand what values ​​to give to lowwall and upperwall

my protein has as COM in Z 6.4 nm and as maximum length in xy and 6.2 nm, and my colvar is "distanceXY"

the radius could be 5.7 nm (0.5 nm less than the original length)

best,

Geo.

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