Re: Lipid into sphere

From: Ropon-Palacios G. (biodano.geo_at_gmail.com)
Date: Thu Mar 18 2021 - 17:18:34 CDT

Yes, but I want calculate number of lipid to placed given an radius of sphere in my case is 425 angstrom

 

From: Mike McCallum <mmccallum_at_PACIFIC.EDU>
Date: Thursday, March 18, 2021 at 5:13 PM
To: KS UIUC <namd-l_at_ks.uiuc.edu>, "Ropon-Palacios G." <biodano.geo_at_gmail.com>
Subject: Re: namd-l: Lipid into sphere

 

Hi Geo.,

I’d look into PACKMOL. It should be able to do exactly this for you, and it is easy to use.

 

https://urldefense.com/v3/__http://leandro.iqm.unicamp.br/m3g/packmol/home.shtml__;!!DZ3fjg!tEJyvrvToC26sOR6PHbYrgfoYR45N1eLtftgToUwnflxGDY0Qrw8HU6arViDo6iSjg$

 

Best

Mike

On Mar 18, 2021, at 2:25 PM, Ropon-Palacios G. <biodano.geo_at_gmail.com> wrote:

 

Dear NAMD users,

 

How can calculate lipid (POPE) number to be placed into an sphere the 425 Angstrom.

 

Best,

 

Geo.

  

--
C. Michael McCallum           
Professor                        
Department of Chemistry, UOP    
mmccallum .at. pacific .dot. edu                (209) 946-2636 v  / (209) 946-2607 fax

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